MR Aluru, H Bae, D Wu, SR Rodermel (2001) The Arabidopsis immutans mutation affects plastid differentiation and the morphogenesis of white and green sectors in variegated plants.  Plant Physiology

J Barr, WS White, L Chen, H Bae, S. Rodermel (2004) The GHOST terminal oxidase regulates developmental programming in tomato fruit.  Plant, Cell & Environment

H Bae, EM Herman, RC Sicher (2005) Exogenous trehalose promotes non-structural carbohydrate accumulation and induces detoxification and stress response proteins in Arabidopsis thaliana grown in liquid culture.  Plant Science

H Bae, EM Herman, BA Bailey, H-J Bae, RC Sicher (2005) Exogenous trehalose alters Arabidopsis transcripts involved in cell wall modification, abiotic stress, nitrogen metabolism, and plant defense.  Physiologia Plantarum

H Bae, MS Kim, RC Sicher, H-J Bae, BA Bailey (2006) Necrosis-and ethylene-inducing peptide from Fusarium oxysporum induces a complex cascade of transcripts associated with signal transduction and cell death in Arabidopsis.  Plant Physiology

H Bae, S-H Kim, MS Kim, RC Sicher, MD Strem, S Natarajan, BA Bailey (2008) The drought response of Theobroma cacao (cacao) and the regulation of genes involved in polyamine biosynthesis by drought and other stresses. Plant Physiology and Biochemistry

H Bae, RC. Sicher, S-H Kim, MS Kim, MD Strem, BA Bailey (2009) Beneficial endophyte, Trichoderma hamatum, delays the onset of drought stress in Theobroma cacao.  Journal of Experimental Botany (BRIC highly cited paper)

H Bae, DP Roberts, H-S Lim, MD Strem, S-C Park, C-M Ryu, RL Melnick, BA Bailey (2011) Endophytic Trichoderma isolates from tropical environments delay disease onset and induce resistance against Phytophthora capsici in hot pepper using multiple mechanisms. Molecular Plant-Microbe Interactions

SU Park, H-S Lim, K-C Park and Y-H Park, H Bae (2012) Fungal endophytes from three cultivars of Panax ginseng Meyer cultivated in Korea. Journal of Ginseng Research

Y-H Park, SG Lee, DJ Ahn, TR Kwon, SU Park, H-S Lim, H Bae (2012) Diversity of fungal endophytes in various tissues of Panax ginseng Meyer cultivated in Korea. Journal of Ginseng Research

SU Park, DJ Ahn, H-J Jeon, TR Kwon, B Choi, H-S Lim, K-H Baek, H Bae (2012) Increase in the contents of ginsenosides in raw ginseng roots in response to exposure to 450 and 47 nm light from light-emitting diodes. Journal of Ginseng Research

Y-H Park, Y-C Kim, SU Park, H-S Lim, JB Kim, B-K Choa, H Bae (2012) Age-dependent distribution of fungal endophytes in Panax ginseng roots cultivated in Korea.  Journal of Ginseng Research

PK Arora, H Bae (2014) Bacterial degradation of chlorophenols and their derivatives. Microbial Cell Factories

PK Arora, H Bae (2014) Biotransformation and chemotaxis of 4-chloro-2-nitrophenol by Pseudomonas sp. JHN. Microbial Cell Factories

PK Arora, TK Mohanta, A Srivastava, VP Singh, H Bae (2014) Metabolic degradation pathway of 2-chloro-4-aminophenol for Arthrobacter sp. SPG. Microbial Cell Factories

PK Arora, H Bae (2015) Biodegradation of 4-chloroindole by Exiguobacterium sp. PMA. Journal of Hazardous Materials

TK Mohanta, PK Arora, N Mohanta, P Parida, H Bae (2015) Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants. BMC Genomics

DM Kasote, SS Katyare, MV Hege, H Bae (2015) Significance of antioxidant potential of plants and its relevance to therapeutic applications. Interntional Journal of Biological Sciences (BRIC highly cited paper)

TK Mohanta, N Mohanta,YK Mohanta, H Bae (2016) Genome-wide identification of calcium dependent protein kinase gene family In plant lineage shows presence of novel D-x-D and D-E-L motifs in EF-hand domain. Frontiers in Plant Science

TK Mohanta, Y-H Park, H Bae (2016) Novel genomic and evolutionary insight of WRKY transcription factor in plant lineage. Scientific Reports

RC Mishra, R Ghosh, H Bae (2016) Plant acoustics: in the search of a sound mechanism for sound signaling in plants. Journal of Experimental Botany

R Ghosh, RC Mishra, B Choi, YS Kwon, DW Bae, S-C Park, M-J Jeong, H Bae (2016) Exposure to sound vibration leads to frequency-specific transcriptomic, proteomic and hormonal changes in Arabidopsis. Scientific Reports. Evaluated at F1000 (BRIC 한빛사https://www.ibric.org/search/?category=HANBIT&detailSearch=false&subcategory=TOTAL&kwd=%EB%B0%B0%ED%95%9C%ED%99%8D

R Ghosh, MA Gururani, LN Ponpandian, RC Mishra, S-Cl Park,  M-J Jeong, H Bae (2017) Expression analysis of sound vibration-regulated genes by touch treatments in Arabidopsis. Frontiers in Plant Science

TK Mohanta, P Kumar, H Bae (2017) Genomics and Evolutionary Aspect of calcium signaling event in calmodulin and calmodulin-like proteins in plants. BMC Plant Biology

B Choi, R Ghosh, MA Gururani, G Shanmugam, J Jeon, J Kim, S-C Park, M-J Jeong, K-H Han, D-W Bae, H Bae (2017) Positive regulatory role of sound vibration treatment in Arabidopsis thaliana against Botrytis cinerea infection. Scientific Reports

EK Chowdhury, J Jeon, SO Rim, Y-H Park, SK Lee, H Bae (2017) Distribution and diversity of bacterial endophytes in mountain cultivated ginseng (Panax ginseng Meyer) in Korea. Scientific Reports

TK Mohanta, H Bae (2017) Analysis of genomic tRNA revealed presence of novel tRNAs in Oryza sativa. Frontiers in Genetics

Y-H Park, Y Kim, RC Mishra, H Bae (2017). Fungal endophytes inhabiting mountain-cultivated ginseng (Panax ginseng Meyer): Diversity and biocontrol activity against ginseng pathogens. Scientific Reports

TK Mohanta, AS Syed, F Ameen, H Bae (2017). Novel Genomic and Evolutionary Perspective of Cyanobacterial tRNAs. Frontiers in Genetics

MEK Chowdhury, H Bae (2018) Bacterial endophytes isolated from mountain-cultivated ginseng (Panax ginseng Mayer) have biocontrol potential against ginseng pathogens. Biological Control

Y-H Park, RC Mishra, SY, H Kim, C-H Park, S-T Seo, H Bae (2018) Endophytic Trichoderma citrinoviride isolated from mountain-cultivated ginseng (Panax ginseng) has great potential as a biocontrol agent against ginseng pathogens. Journal of Ginseng Research

H Kim, SO Rim, H Bae (2018)  Antimicrobial potential of metabolites extracted from ginseng bacterial endophyte Burkholderia stabilis against ginseng pathogens. Biological Control

M Ryu, RC Mishra, J Jeon, SK Lee,  BS Hwang, H Bae (2018) Drought-induced susceptibility for Cenangium ferruginosum leads to progression of Cenangium-dieback disease in Pinus koraiensis. Scientific Reports

Y-H Park, RC Mishra, S Yoon, H Kim, C-H Park, S-T Seo, H Bae (2019) Endophytic Trichoderma citrinoviride isolated from mountain-cultivated ginseng (Panax ginseng) has great potential as a biocontrol agent against ginseng pathogens. Journal of Ginseng Research

Y Liu, LN Ponpandian, H Kim, J Jeon, BS Hwang, SK Lee, H Bae (2019) Bacterial endophytes of pine trees across Korea and their nematicidal activity against pine wood nematode. Scientific Reports 

LN Ponpandian, G Shanmugam, J Jeon, Y-Hn Park, SK Lee, H Bae (2019) Molecular characterization of bacterial endophytes from four Pinus species and their nematicidal activity against pine wood nematode. Scientific Reports 

H Kim, TK Mohanta, Y-H Park, S-C Park, G Shanmugam, J-S Park, J Jeon, H Bae (2020) Complete genome sequence of the mountain-cultivated ginseng endophyte Burkholderia stabilis and its antimicrobial compounds against ginseng root rot disease. Biological Control

LL Chu, JAV Montecillo, H Bae (2020) Recent advances in the metabolic engineering of yeasts for ginsenoside biosynthesis. Frontiers in Bioengineering and Biotechnology 

P Tiwari, T Khare, V Shriram, H Bae*, V Kumar* (2021) Plant synthetic biology for producing potent phyto-antimicrobials to combat antimicrobial resistance. Biotechnology Advances  (BRIC 한빛사 https://www.ibric.org/myboard/read.php?Board=hbs_treatise&id=68479&idauthorid=27008&Page=1&BackLink=L2hhbmJpdHNhL3RyZWF0aXNlX3N1Yi5waHA/UGFnZT0x)

Tiwari P, Srivastava Y, Bae H (2021) Trends in pharmaceutical design of endophytes as anti-infective. Current Topics in Medicinal Chemistry (21)1572-1586 May 23  DOI : 10.2174/1568026621666210524093234

Chu LL, Bae H (2022) Bacterial endophytes from ginseng and biotechnological application. Journal of Ginseng Research 46 : 1-10

Ali S, Tyagi A, Mushtaq M, Al-Mahmoudi H, Bae H (2022) Harnessing plant microbiome for mitigating arsenic toxicity in sustainable agriculture. Environmental Pollution 1;300:118940. doi: 10.1016/j.envpol.2022.118940.

Montecillo JAV, Bae H (2022) Reclassification of Brevibacterium frigoritolerans as Peribacillus frigoritolerans comb. nov. based on phylogenomics and multiple molecular synapomorphies. International Journal of Systemic and Evolutionary Microbiology 72(5) https://doi.org/10.1099/ijsem.0.00538

Ali S, Tyagi A, Park S, Mir RA, Mushtaq M, Bhat B, Mahmoudi H, Bae H (2022) Decoding the plant microbiome to ameliorate agricultures thirst: Mechanisms and perspectives.  Environmental and Experimental Botany 201: 104933 (1-19 pages) https://doi.org/10.1016/j.envexpbot.2022.104933

Montecillo JAV, Bae H (2022) Koranimine, a potential nematicidal compounds from the endophytic bacterium Peribacillus frigoritolerans. Scientific Reports 12:18883 https://doi.org/10.1038/s41598-022-20461-8

Tiwari P, Kang S, Bae H (2023) Plant-endophyte associations: Rich yet under-explored sources of novel bioactive molecules and applications. Microbiological Research 266, 127241 https://doi.org/10.1016/j.micres.2022.127241

Tyagi A, Ali S, Ramakrishna G, Singh A, Park S, Mahmoudi H, Bae H (2023) Revisiting the role of polyamines in plant growth and abiotic stress resilience: mechanisms, cross talk and future perspectives. Journal of Plant Growth Regulation https://doi.org/10.1007/s00344-022-10847-3

Tyagi A, Ali S, Park S, Bae H (2023) Assessing the effect of sound vibrations on plant neurotransmitters in Arabidopsis. Journal of Plant Growth Regulation https://doi.org/10.1007/s00344-023-10918-z

S Ali, A Tyagi, S Rajarammohan, Z Mir, M Mushtaq, H Bae (2023) Revisiting Alternaria-host interactions: New insights on its pathogenesis, defense mechanisms and control strategies in economically important crops. Scientia Horticulturae 322 (2023) 112424

S Ali, A Tyagi, H Bae (2023) ROS interplay between plant growth and stress biology: challenges and future perspectives. Plant Physiology and Biochemistry 203(2023)108032 doi.org/10.1016/j.plaphy.2023.108032  

S Ali, A Tyagi, S. Park, H Bae (2023) Deciphering the role of mechanosensitive channels in plant root biology: perception, signaling, and adaptive responses. Planta (2023)258:105  https://doi.org/10.1007/s00425-023-04261-6

S Ali, A Tyagi, S. Park, H Bae (2024) Understanding the mechanobiology of phytoacoustics through molecular lens: Mechanisms and future perspectives. Journal of Advanced Research S2090-1232(23)00398-3. doi: 10.1016/j.jare.2023.12.011. (BRIC 한빛사  https://www.ibric.org/bric/hanbitsa/treatise.do?mode=treatise-view&id=91839&authorId=27008#!/list)